Sequence Analysis Working Group

Upcoming Events

Beginning Sept. 10, 2010 upcoming meetings will occur weekly on Fridays, 2:00-3:30PM in 2695 SPH I.

Please note the Friday, November 5, 2010 meeting will be canceled due to ASHG Nov 2-6, 2010.

Aims

This group is responsible for implementing and coordinating our sequence analysis tools. The group meets weekly on Fridays, 2:00-3:30PM in 2695 SPH I.

Status and Goals by Project

• SardiNIA sequencing
• Diabetes sequencing
• 1000 Genomes sequencing
• GSK sequencing
• Software/Pipeline

Meeting Notes and Agendas

• Sequencing 2013/02/11
• Sequencing 2012/01/07
• Sequencing 2012/12/19
• Sequencing 2012/12/12
• Sequencing 2012/12/05
• Sequencing 2012/09/26
• Sequencing 2012/09/12
• Sequencing 2012/07/19
• Sequencing 2012/05/31
• Sequencing 2012/04/27
• Sequencing 2012/04/20
• Sequencing 2012/04/13
• Sequencing 2012/03/30
• Sequencing 2012/03/16
• Sequencing 2012/03/09
• Sequencing 2012/02/24
• Sequencing 2012/02/10
• Sequencing 2012/01/20
• Sequencing 2012/01/13
• Sequencing 2011/12/07
• Sequencing 2011/11/30
• Sequencing 2011/11/16
• Sequencing 2011/11/9
• Sequencing 2011/10/19
• Sequencing 2011/10/05
• Sequencing 2011/09/28
• Sequencing 2011/09/21
• Sequencing 2011/08/31
• Sequencing 2011/08/10
• Sequencing 2011/08/03
• Sequencing 2011/07/27
• Sequencing 2011/07/13
• Sequencing 2011/07/06
• Sequencing 2011/06/29
• Sequencing 2011/06/01
• Sequencing 2011/05/20
• Sequencing 2011/04/29
• Sequencing 2011/04/22
• Sequencing 2011/04/15
• Sequencing 2011/04/01
• Sequencing 2011/02/11
• Sequencing 2011/01/28
• Sequencing 2011/01/21
• Sequencing 2011/01/14
• Sequencing 2011/01/07
• Sequencing 2010/12/17
• Rare variants analysis working group meeting 2010/12/03
• Sequencing 2010/11/19
• Sequencing 2010/11/12
• Sequencing 2010/10/29
• Sequencing 2010/10/22
• Sequencing 2010/10/15
• Sequencing 2010/10/01
• Sequencing 2010/09/24
• Sequencing 2010/09/17
• Sequencing 2010/09/01
• Sequencing 2010/08/17
• Sequencing 2010/08/10
• Sequencing 2010/08/03
• Sequencing 2010/07/27
• Sequencing 2010/07/20
• Sequencing 2010/06/29
• Sequencing 2010/06/08
• Sequencing 2010/05/25
• Sequencing 2010/05/18
• Sequencing 2010/04/27
• Sequencing 2010/04/20
• Sequencing 2010/04/13
• Sequencing 2010/03/30
• Sequencing 2010/03/23
• Sequencing 2010/03/16
• Sequencing 2010/03/09
• Sequencing 2010/03/02
• Sequencing 2010/02/16
• Sequencing 2010/02/09
• Sequencing 2010/02/02
• Sequencing 2010/01/26
• Sequencing 2010/01/19
• Sequencing 2010/01/13

Late Night Reading

Draft 1000 Genomes Paper (Confidential)

Supplementary Text

Supplementary Tables

References

Genome Wide Sequencing Background

Illumina Pipeline

Computational Working Group

Currently working to put the pieces in place to handle incoming Illumina whole genome sequence data.

Sequence Image Compression

Pipeline Software

UM SNP calling work flow

Project level data validation

Psoriasis RNA-seq

T2D GO Grant Sequencing Project

• Working groups and members
• SNP calling/QC
• Workflow and responsibilities

Rare Variant Analysis

• Simulation Framework

Group E-mail

We have a group e-mail for important discussions and announcements. It is sequence.group@umich.edu.