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Welcome to the CSG[edit]

Welcome to Abecasis Group

Abecasis Lab

Group Meetings[edit]

Literature[edit]

Project Pages[edit]

These pages point to useful information about individual projects.

  • Variant Calling Pipeline -- A set of tools for analyzing next generation sequence data, to be deployed at NCBI and used to evaluate data quality, map short read data and, ultimately, call sequence variants, including SNPs and copy number polymorphism.
  • NHLBI Deep Whole Genome Sequencing Project -- We serve as the "Informatics Resource Center" for variant discovery and genotyping in 30x coverage whole genome sequence data for approximately 20,000 individuals from ongoing NHLBI disease specific research studies.
  • NHLBI Whole Exome Sequencing -- We are collaborating with the Broad Institute to generate and analyse whole exome sequences to study traits of interest to NHLBI.
  • Psoriasis Projects - A series of projects to further understanding of the genetics of Psoriasis with JT Elder and his group.
  • Genes for Good -- A study to recruit individuals online (on Facebook), send them a spit kit, and ask them to complete online surveys for genetic association studies.

Potential Projects[edit]

These projects are currently under discussion and should be considered highly confidential.

Programming Resources[edit]

Local Data Analysis Tools[edit]

Cluster Documentation[edit]

Please submit technical support requests to our help desk email queue at csg.help@umich.edu. We aim to respond to all requests within 24 hours.

Documentation and Job Aids[edit]